16-09-2021

Rietveld_l 1995 Rietveld Software For Mac

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Georgia Braliou

Contents








Current Position

  • Visiting Lecturerat the Department of Computer Science and Biomedical Informatics, University of Thessaly.

Past Positions

  • Visiting Assistant Professor at the Departmentof Biochemistry and Biotechnology, University of Thessaly, Larissa
  • Visiting Assistant Professor at the Departmentof Medical Laboratories, Scholl of Health Professions, TechnologicalEducational Institute of Larissa
  • Post-doctoral Research Fellow at the Schoolof Medicine, School of Health Sciences, University of Thessaly,Larissa

Education

  • 1995-2000: Ph.D in Molecular Biology/Biochemistry,performed at
    • European Molecular BiologyLaboratory, (EMBL), Heidelberg , Germany and
    • Department of MolecularBiology, Facultyof Sciences, Mathematics and Informatics, University of Nijmegen,The Netherlands
  • 1992-1995: Postgraduate Research at the National Hellenic ResearchFoundation (NHRF), Athens
  • 1985-1990: B.Sc. in Chemistry, Faculty of Chemistry,University of Athens

Researchinterests

My research was focused on the studyof transcriptional regulation of genes involved in oncogenesis, hypoxia, andinherited diseases. Currently, I am interested in geneticepidemiology and I focus on associationstudies of gene polymorphisms with oncogenesis or multifactorial inheriteddiseases.

Publications


  • Ciana, P.,Braliou, G.G., Demay, F., von Lindern, M., Barettino, D., Beug, H. andStunnenberg, H. ‘Leukemic transformation by the v-ErbA oncoprotein entailsconstitutive binding to and repression of an erythroid enhancer in vivo. EMBOJournal, 1998, 17 (24), 7382-7394. (The first two authors participated equally)
  • Braliou, G.G., Ciana, P., Klaassen, W Gandrillon, O. and Stunnenberg, H. ‘The v-ErbAoncoprotein quenches the activity of an erythroid-specific enhancer’. Oncogene,2001, 20 (7), 775-787.
  • Braliou, G.G., Venieris, Ε., Kalousi, A., andSimos, G. ‘Reconstitution of human Hypoxia Inducible Factor (HIF-1) in yeastcells: a simple in vivo system to identify and characterize HIF-1α effectors’.Biochemical and Biophysical Research Communications, 2006, 346, 1289-1296.
  • Brinkman, A.B., Pennings, S.W.C., Braliou, G.G.,Rietveld, L.E.G and Stunnenberg, H.G. ‘DNA methylation immediately adjacent toactive histone marking does not silence transcription’ Nucleic Acids Research2007, 35, (3), 801–811.
  • Braliou G.G., Verga Falzacappa M.V., Chachami,G., Casanovas G., Muckenthaler M. U., and Simos, G. ‘2-oxoglutarate-dependentoxygenases control hepcidin gene expression’. Journal of Hepatology 2008, 48,801-10. (ΙF: 7,056, C:12)
  • Chachami, G., Paraskeva, E., Mingot, J.M.,Braliou, G.G., Görlich, D., and Simos, G. ‘Transport of hypoxia-induciblefactor HIF-1α into the nucleus involves importins 4 and 7’. Biochemical andBiophysical Research Communications, 2009, 390, 235-240.
  • Braliou GG, Grigoriadou AM, Kontou PI, Bagos PG. The role of genetic polymorphisms of the Renin-Angiotensin System in renal diseases: A meta-analysis. Comput Struct Biotechnol J. 2014 Jun 11;10(16):1-7 [PDF] [Pubmed] [Google Scholar]
  • Braliou GG, Pantavou KG, Kontou PI, Bagos PG. Polymorphisms of the CD24 Gene Are Associated with Risk of Multiple Sclerosis: A Meta-Analysis. International Journal of Molecular Sciences. 2015 (in press)
  • Pantavou KG, Braliou GG, Kontou PI, Dimou NL, Bagos PG. A meta-analysis of FZD3genepolymorphisms and theirassociation with schizophrenia. Psychiatric Genetics, 2016 (in press)

Citations

(Up to July 2010)

Total (excluding self-citations)citations: = 68

Totalimpactfactor:39,36

Meanimpact factorperpublication: 6,56

  1. Most of the 'newcomer' suffer from the lack of guides on how to perform Rietveld refinements and resources in this area is extremely scarce. To sum up, those who wish to have an idea on what the Rietveld method is all about and what it can do for you, this book would most certainly be a valuable reference (especially references cited therein.
  2. Rietveld is a web-based collaborative code review tool for Subversion written by Guido van Rossum to run on Google's cloud service.Van Rossum based Rietveld on the experience he had writing Mondrian. Mondrian was a proprietary application used internally by Google to review their code.
  3. Two machine learning methods, support vector machine and K-Nearest Neighbours (KNN) were investigated in this paper to predict the coagulant dosage in water treatment plants (WTPs). Two types of support vector machine regression techniques, ε-SVR and v-SVR, using two different kernel functions (radial basis function (RBF) and polynomial function), and KNN were investigated in order to predict.

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DDM program is designed for crystal structure analysis from powder diffraction data by making use of either Rietveld or Derivative Difference Minimization (DDM) method. In the DDM method the refinement is aimed not at minimizing the absolute difference between the experimental and calculated profiles but at minimizing the oscillations (or curvature) of the difference curve.